species:   Rhsol
pid:       PID0605
parent:    Rhi-milR-131
paralog:   
locus:     KB318401.1:627-713
matures:   ['UGAUGGAGUGGAAUAUGACC', 'GAUAUACCUACUCCAGGAGG']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB318401.1:627-713

6 out of bounds
8 alignments
7 proper strand
6 stranded perfect matches

        **********************                         **********************          
GAUUUCAGGAGAUAUACCUACUCCAGGAGGCAGCAAUUUGGAUCAGUCAAUGGACAUUGAUGGAGUGGAAUAUGACCCUGGAACUUA
..(((((((..((((.((.((((((.((..(((....)))..)).(((....))).....)))))))).))))...)))))))....
---------------------------------------------------------UGAUGGAGUGGAAUAUGACC---------- l=20 a=0 c
----------GAUAUACCUACUCCAGGAGG--------------------------------------------------------- l=20 a=0 c*
--------------------------------------------------------UUGAUGGAGUGGAAUAUGACCC--------- l=22 a=1 ma
----------GAUAUACCUACUCCAGGAGG--------------------------------------------------------- l=20 a=0 ma*

----------------------------------------------------------GAUGGAGUGGAAUAUGAC----------- l=18 a=1 
---------------------------------------------------------UGAUGGAGUGGAAUAUGAC----------- l=19 a=1 
--------------------------------------------------------UUGAUGGAGUGGAAUAUGACa---------- l=21 a=1 
--------------------------------------------------------UUGAUGGAGUGGAAUAUGACCC--------- l=22 a=1 (ma)
-----------------------------------------------------ACAUUGAUGGAGUGGAAUAUGAC----------- l=23 a=1 
-------------------------GGAGGCAGCAAUUUGGAUCA------------------------------------------ l=20 a=1 
-------------------------GGAGGCAGCAAUUUGGAUCAG----------------------------------------- l=21 a=1 

mb-01011
ax-1001011
ku-01
ss-100111101100
fn-011
